IL_7TOP_135
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_135 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0587
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
7TOP|1|A58S|A|44
7TOP|1|A58S|C|45
7TOP|1|A58S|G|46
7TOP|1|A58S|C|47
7TOP|1|A58S|A|48
7TOP|1|A58S|G|49
7TOP|1|A58S|C|50
7TOP|1|A58S|G|51
7TOP|1|A58S|A|52
7TOP|1|A58S|A|53
7TOP|1|A58S|A|54
7TOP|1|A58S|U|55
7TOP|1|A58S|G|56
7TOP|1|A58S|C|57
7TOP|1|A58S|G|58
7TOP|1|A58S|A|59
7TOP|1|A58S|U|60
7TOP|1|A58S|A|61
7TOP|1|A58S|C|62
7TOP|1|A58S|G|63
7TOP|1|A58S|U|64
*
7TOP|1|A58S|A|96
7TOP|1|A58S|A|97
7TOP|1|A58S|U|98
7TOP|1|A58S|C|99
7TOP|1|A58S|U|100
Current chains
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL25
- 60S ribosomal protein L25
- Chain AL35
- 60S ribosomal protein L35-A
- Chain AL37
- 60S ribosomal protein L37-A
- Chain AL39
- 60S ribosomal protein L39
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