IL_7TOP_143
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 7TOP|1|A5S|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_143 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.0898
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7TOP|1|A5S|A|72
7TOP|1|A5S|C|73
7TOP|1|A5S|C|74
7TOP|1|A5S|G|75
7TOP|1|A5S|A|76
7TOP|1|A5S|G|77
7TOP|1|A5S|U|78
7TOP|1|A5S|A|79
7TOP|1|A5S|G|80
*
7TOP|1|A5S|C|100
7TOP|1|A5S|G|101
7TOP|1|A5S|A|102
7TOP|1|A5S|A|103
7TOP|1|A5S|A|104
7TOP|1|A5S|C|105
7TOP|1|A5S|U|106
Current chains
- Chain A5S
- 5S rRNA
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL07
- 60S ribosomal protein L7-A
- Chain AL10
- RPL10 isoform 1
- Chain AL20
- 60S ribosomal protein L20-A
- Chain AL21
- 60S ribosomal protein L21-A
Coloring options: