IL_7TOP_144
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGUG*CAU
- Length
- 7 nucleotides
- Bulged bases
- 7TOP|1|A5S|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_144 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.0824
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7TOP|1|A5S|A|84
7TOP|1|A5S|G|85
7TOP|1|A5S|U|86
7TOP|1|A5S|G|87
*
7TOP|1|A5S|C|94
7TOP|1|A5S|A|95
7TOP|1|A5S|U|96
Current chains
- Chain A5S
- 5S rRNA
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL07
- 60S ribosomal protein L7-A
- Chain AL10
- RPL10 isoform 1
- Chain AL20
- 60S ribosomal protein L20-A
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