IL_7TOP_150

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGCU*GAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_150 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.1083

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7TOP|1|A25S|G|2823
7TOP|1|A25S|G|2824
7TOP|1|A25S|C|2825
7TOP|1|A25S|U|2826
*
7TOP|1|A25S|G|2863
7TOP|1|A25S|A|2864
7TOP|1|A25S|U|2865
7TOP|1|A25S|U|2866
7TOP|1|A25S|C|2867

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL10

RPL10 isoform 1

Chain AL29

RPL29 isoform 1