IL_7TOP_152

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGCC*GUUGUU

Length

10 nucleotides

Bulged bases

7TOP|1|A25S|U|3354, 7TOP|1|A25S|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_152 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.353

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7TOP|1|A25S|A|3347
7TOP|1|A25S|G|3348
7TOP|1|A25S|C|3349
7TOP|1|A25S|C|3350
*
7TOP|1|A25S|G|3353
7TOP|1|A25S|U|3354
7TOP|1|A25S|U|3355
7TOP|1|A25S|G|3356
7TOP|1|A25S|U|3357
7TOP|1|A25S|U|3358

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL22

60S ribosomal protein L22-A