IL_7TOQ_010

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_010 not in the Motif Atlas

Geometric match to IL_4V88_393

Geometric discrepancy: 0.3116

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

7TOQ|1|A18S|U|116
7TOQ|1|A18S|C|117
7TOQ|1|A18S|C|118
7TOQ|1|A18S|U|119
7TOQ|1|A18S|U|120
7TOQ|1|A18S|U|121
*
7TOQ|1|A18S|A|343
7TOQ|1|A18S|U|344
7TOQ|1|A18S|U|345
7TOQ|1|A18S|C|346
7TOQ|1|A18S|G|347

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS08

40S ribosomal protein S8