IL_7TOQ_022

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_022 not in the Motif Atlas

Geometric match to IL_4V88_467

Geometric discrepancy: 0.1831

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7TOQ|1|A18S|G|437
7TOQ|1|A18S|G|438
7TOQ|1|A18S|A|439
*
7TOQ|1|A18S|U|454
7TOQ|1|A18S|A|455
7TOQ|1|A18S|C|456

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL23

60S ribosomal protein L23

Chain AS06

40S ribosomal protein S6

Chain AS08

40S ribosomal protein S8