IL_7TOQ_030
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 7TOQ|1|A18S|U|607
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_030 not in the Motif Atlas
- Geometric match to IL_4V88_426
- Geometric discrepancy: 0.2409
- The information below is about IL_4V88_426
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7TOQ|1|A18S|A|599
7TOQ|1|A18S|G|600
7TOQ|1|A18S|G|601
7TOQ|1|A18S|G|602
7TOQ|1|A18S|C|603
7TOQ|1|A18S|A|604
7TOQ|1|A18S|A|605
7TOQ|1|A18S|G|606
7TOQ|1|A18S|U|607
7TOQ|1|A18S|C|608
*
7TOQ|1|A18S|G|635
7TOQ|1|A18S|C|636
7TOQ|1|A18S|U|637
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS02
- 40S ribosomal protein S2
- Chain AS03
- 40S ribosomal protein S3
- Chain AS09
- 40S ribosomal protein S9
- Chain AS23
- 40S ribosomal protein S23
- Chain AS30
- 40S ribosomal protein S30
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