IL_7TOQ_033
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 7TOQ|1|A18S|A|668
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_033 not in the Motif Atlas
- Geometric match to IL_1R3E_001
- Geometric discrepancy: 0.146
- The information below is about IL_1R3E_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_05670.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
7TOQ|1|A18S|G|665
7TOQ|1|A18S|U|666
7TOQ|1|A18S|U|667
7TOQ|1|A18S|A|668
7TOQ|1|A18S|A|669
7TOQ|1|A18S|A|670
7TOQ|1|A18S|A|671
*
7TOQ|1|A18S|U|1161
7TOQ|1|A18S|C|1162
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS02
- 40S ribosomal protein S2
- Chain AS23
- 40S ribosomal protein S23
- Chain AS26
- eS26
Coloring options: