IL_7TOQ_035
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_035 not in the Motif Atlas
- Geometric match to IL_5J7L_037
- Geometric discrepancy: 0.1842
- The information below is about IL_5J7L_037
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
7TOQ|1|A18S|C|676
7TOQ|1|A18S|G|677
7TOQ|1|A18S|U|678
7TOQ|1|A18S|A|679
7TOQ|1|A18S|G|680
*
7TOQ|1|A18S|U|1025
7TOQ|1|A18S|C|1026
7TOQ|1|A18S|A|1027
7TOQ|1|A18S|A|1028
7TOQ|1|A18S|G|1029
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AS11
- 40S ribosomal protein S11
- Chain AS13
- 40S ribosomal protein S13
- Chain AS22
- 40S ribosomal protein S15a
- Chain AS23
- 40S ribosomal protein S23
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