IL_7TOQ_042

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_042 not in the Motif Atlas

Geometric match to IL_3OXE_003

Geometric discrepancy: 0.2515

The information below is about IL_3OXE_003

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

7TOQ|1|A18S|A|922
7TOQ|1|A18S|G|923
*
7TOQ|1|A18S|C|1019
7TOQ|1|A18S|A|1020
7TOQ|1|A18S|U|1021
7TOQ|1|A18S|U|1022

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS13

40S ribosomal protein S13

Chain AS22

40S ribosomal protein S15a

Chain AS27

40S ribosomal protein S27