IL_7TOQ_052
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_052 not in the Motif Atlas
- Geometric match to IL_7A0S_031
- Geometric discrepancy: 0.2153
- The information below is about IL_7A0S_031
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
7TOQ|1|A18S|U|1101
7TOQ|1|A18S|G|1102
7TOQ|1|A18S|C|1103
*
7TOQ|1|A18S|G|1129
7TOQ|1|A18S|G|1130
7TOQ|1|A18S|G|1131
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS01
- 40S ribosomal protein S3a
- Chain AS13
- 40S ribosomal protein S13
- Chain AS17
- 40S ribosomal protein S17
- Chain AS26
- eS26
- Chain AS27
- 40S ribosomal protein S27
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