IL_7TOQ_056

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

7TOQ|1|A18S|G|1207

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_056 not in the Motif Atlas

Geometric match to IL_6CZR_148

Geometric discrepancy: 0.2374

The information below is about IL_6CZR_148

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

7TOQ|1|A18S|G|1206
7TOQ|1|A18S|G|1207
7TOQ|1|A18S|A|1208
*
7TOQ|1|A18S|U|1691
7TOQ|1|A18S|U|1692

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS26

eS26

Chain MRNA

RNA (5'-R(*CP*AP*CP*AP*UP*GP*UP*UP*CP*C)-3')