IL_7TOQ_068

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_068 not in the Motif Atlas

Geometric match to IL_7A0S_042

Geometric discrepancy: 0.1468

The information below is about IL_7A0S_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7TOQ|1|A18S|U|1347
7TOQ|1|A18S|G|1348
7TOQ|1|A18S|G|1349
*
7TOQ|1|A18S|C|1380
7TOQ|1|A18S|G|1381
7TOQ|1|A18S|A|1382

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS00

40S_SA_C domain-containing protein

Chain AS02

40S ribosomal protein S2

Chain AS03

40S ribosomal protein S3