IL_7TOQ_073

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_073 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1242

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7TOQ|1|A18S|A|1537
7TOQ|1|A18S|C|1538
7TOQ|1|A18S|U|1539
*
7TOQ|1|A18S|A|1594
7TOQ|1|A18S|U|1595
7TOQ|1|A18S|U|1596

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS05

Ribosomal protein S5

Chain AS18

40S ribosomal protein S18

Chain AS19

eS19

Chain AS25

40S ribosomal protein S25