IL_7TOQ_076

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_076 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1161

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

7TOQ|1|A18S|G|1604
7TOQ|1|A18S|G|1605
7TOQ|1|A18S|G|1606
7TOQ|1|A18S|A|1607
7TOQ|1|A18S|U|1608
7TOQ|1|A18S|C|1609
7TOQ|1|A18S|G|1610
*
7TOQ|1|A18S|C|1629
7TOQ|1|A18S|A|1630
7TOQ|1|A18S|U|1631
7TOQ|1|A18S|G|1632
7TOQ|1|A18S|A|1633
7TOQ|1|A18S|A|1634
7TOQ|1|A18S|C|1635

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS18

40S ribosomal protein S18

Chain AS19

eS19