IL_7TOQ_100
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCGUGG*CG
- Length
- 8 nucleotides
- Bulged bases
- 7TOQ|1|A25S|G|188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_100 not in the Motif Atlas
- Geometric match to IL_1R3E_001
- Geometric discrepancy: 0.183
- The information below is about IL_1R3E_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_05670.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
7TOQ|1|A25S|U|184
7TOQ|1|A25S|C|185
7TOQ|1|A25S|G|186
7TOQ|1|A25S|U|187
7TOQ|1|A25S|G|188
7TOQ|1|A25S|G|189
*
7TOQ|1|A25S|C|252
7TOQ|1|A25S|G|253
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL04
- 60S ribosomal protein L4
- Chain AL13
- eL13
- Chain AL26
- 60S ribosomal protein L26
- Chain AL37
- 60S ribosomal protein L37
Coloring options: