IL_7TOQ_114

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

7TOQ|1|A25S|G|666, 7TOQ|1|A25S|A|667, 7TOQ|1|A25S|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_114 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2072

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

7TOQ|1|A25S|G|487
7TOQ|1|A25S|G|488
*
7TOQ|1|A25S|C|665
7TOQ|1|A25S|G|666
7TOQ|1|A25S|A|667
7TOQ|1|A25S|C|668
7TOQ|1|A25S|C|669

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL18

eL18

Chain EL28

60S ribosomal protein L28