IL_7TOQ_119

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

7TOQ|1|A25S|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_119 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2935

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

7TOQ|1|A25S|G|508
7TOQ|1|A25S|A|509
7TOQ|1|A25S|U|510
*
7TOQ|1|A25S|A|649
7TOQ|1|A25S|C|650

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL13

eL13

Chain AL28

60S ribosomal protein L27a