IL_7TOQ_128

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_128 not in the Motif Atlas

Geometric match to IL_4WF9_007

Geometric discrepancy: 0.2298

The information below is about IL_4WF9_007

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7TOQ|1|A25S|G|1075
7TOQ|1|A25S|C|1076
*
7TOQ|1|A25S|G|1234
7TOQ|1|A25S|G|1235
7TOQ|1|A25S|C|1236

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL06

60S ribosomal protein L6

Chain AL07

uL30

Chain AL29

eL29