IL_7TOQ_140

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_140 not in the Motif Atlas

Geometric match to IL_7A0S_005

Geometric discrepancy: 0.2491

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7TOQ|1|A25S|C|1474
7TOQ|1|A25S|G|1475
7TOQ|1|A25S|C|1476
*
7TOQ|1|A25S|G|1489
7TOQ|1|A25S|G|1490

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL13

eL13

Chain AL28

60S ribosomal protein L27a

Chain AL29

eL29

Chain AL42

eL42