IL_7TOQ_143

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GGU

Length

5 nucleotides

Bulged bases

7TOQ|1|A25S|G|1577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_143 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.2362

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

7TOQ|1|A25S|G|1550
7TOQ|1|A25S|C|1551
*
7TOQ|1|A25S|G|1576
7TOQ|1|A25S|G|1577
7TOQ|1|A25S|U|1578

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL02

uL2

Chain AL19

60S ribosomal protein L19

Chain AL43

60S ribosomal protein L37a