IL_7TOQ_157

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCU*AC

Length

6 nucleotides

Bulged bases

7TOQ|1|A25S|C|1755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_157 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.253

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

7TOQ|1|A25S|G|1753
7TOQ|1|A25S|U|1754
7TOQ|1|A25S|C|1755
7TOQ|1|A25S|U|1756
*
7TOQ|1|A25S|A|1776
7TOQ|1|A25S|C|1777

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL05

60S ribosomal protein L5