IL_7TOQ_158

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_158 not in the Motif Atlas

Geometric match to IL_4AOB_005

Geometric discrepancy: 0.2287

The information below is about IL_4AOB_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

7TOQ|1|A25S|G|1761
7TOQ|1|A25S|C|1762
7TOQ|1|A25S|C|1763
*
7TOQ|1|A25S|G|1769
7TOQ|1|A25S|A|1770
7TOQ|1|A25S|U|1771

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL11

60S ribosomal protein L11