IL_7TOQ_164
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCG*CG
- Length
- 5 nucleotides
- Bulged bases
- 7TOQ|1|A25S|C|1921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_164 not in the Motif Atlas
- Homologous match to IL_8GLP_078
- Geometric discrepancy: 0.2164
- The information below is about IL_8GLP_078
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 67
Unit IDs
7TOQ|1|A25S|C|1920
7TOQ|1|A25S|C|1921
7TOQ|1|A25S|G|1922
*
7TOQ|1|A25S|C|2062
7TOQ|1|A25S|G|2063
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain AL07
- uL30
- Chain AL14
- 60S ribosomal protein L14
- Chain AL16
- uL13
- Chain AL20
- eL20
- Chain AL33
- 60S ribosomal protein L35a
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