IL_7TOQ_170

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

7TOQ|1|A25S|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_170 not in the Motif Atlas

Geometric match to IL_3D0U_001

Geometric discrepancy: 0.3874

The information below is about IL_3D0U_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

7TOQ|1|A25S|C|2083
7TOQ|1|A25S|C|2084
7TOQ|1|A25S|G|2085
*
7TOQ|1|A25S|C|2272
7TOQ|1|A25S|G|2273

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL07

uL30

Chain AL18

eL18

Chain AL32

60S ribosomal protein L32