IL_7TOQ_176

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

7TOQ|1|A25S|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_176 not in the Motif Atlas

Geometric match to IL_4MGN_001

Geometric discrepancy: 0.2877

The information below is about IL_4MGN_001

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

7TOQ|1|A25S|U|2415
7TOQ|1|A25S|G|2416
7TOQ|1|A25S|A|2417
7TOQ|1|A25S|A|2418
7TOQ|1|A25S|C|2419
*
7TOQ|1|A25S|G|2427
7TOQ|1|A25S|A|2428
7TOQ|1|A25S|A|2429

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL17

60S ribosomal protein L17

Chain AL19

60S ribosomal protein L19

Chain AL39

eL39