IL_7TOQ_183

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

7TOQ|1|A25S|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_183 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.236

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

7TOQ|1|A25S|C|2646
7TOQ|1|A25S|A|2647
7TOQ|1|A25S|G|2648
*
7TOQ|1|A25S|C|2685
7TOQ|1|A25S|G|2686
7TOQ|1|A25S|U|2687
7TOQ|1|A25S|G|2688

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL34

60S ribosomal protein L34