3D structure

PDB id
7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UAG*UGGG
Length
7 nucleotides
Bulged bases
7TOQ|1|A25S|G|4183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOQ_208 not in the Motif Atlas
Homologous match to IL_8C3A_100
Geometric discrepancy: 0.1499
The information below is about IL_8C3A_100
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38958.10
Basepair signature
cWW-cWW-cWW-tHS
Number of instances in this motif group
9

Unit IDs

7TOQ|1|A25S|U|3927
7TOQ|1|A25S|A|3928
7TOQ|1|A25S|G|3929
*
7TOQ|1|A25S|U|4181
7TOQ|1|A25S|G|4182
7TOQ|1|A25S|G|4183
7TOQ|1|A25S|G|4184

Current chains

Chain A25S
28S rRNA

Nearby chains

Chain AL02
uL2
Chain AL15
60S ribosomal protein L15
Chain AL42
eL42
Chain PTRN
Transfer RNA; tRNA

Coloring options:


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