IL_7TOQ_211

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGUGUAGAAUAAG*CUACU

Length

19 nucleotides

Bulged bases

7TOQ|1|A25S|G|3958, 7TOQ|1|A25S|A|3965

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_211 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.37

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7TOQ|1|A25S|A|3954
7TOQ|1|A25S|G|3955
7TOQ|1|A25S|G|3956
7TOQ|1|A25S|U|3957
7TOQ|1|A25S|G|3958
7TOQ|1|A25S|U|3959
7TOQ|1|A25S|A|3960
7TOQ|1|A25S|G|3961
7TOQ|1|A25S|A|3962
7TOQ|1|A25S|A|3963
7TOQ|1|A25S|U|3964
7TOQ|1|A25S|A|3965
7TOQ|1|A25S|A|3966
7TOQ|1|A25S|G|3967
*
7TOQ|1|A25S|C|4054
7TOQ|1|A25S|U|4055
7TOQ|1|A25S|A|4056
7TOQ|1|A25S|C|4057
7TOQ|1|A25S|U|4058

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AS25

40S ribosomal protein S25

Chain PTRN

Transfer RNA; tRNA