IL_7TOQ_221

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_221 not in the Motif Atlas

Geometric match to IL_5J7L_259

Geometric discrepancy: 0.1972

The information below is about IL_5J7L_259

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7TOQ|1|A25S|G|4401
7TOQ|1|A25S|C|4402
7TOQ|1|A25S|U|4403
*
7TOQ|1|A25S|G|4440
7TOQ|1|A25S|A|4441
7TOQ|1|A25S|U|4442

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL10

Ribosomal protein L10

Chain AL29

eL29