IL_7TOQ_227

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

7TOQ|1|A25S|A|4518, 7TOQ|1|A25S|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_227 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.1354

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7TOQ|1|A25S|C|4458
7TOQ|1|A25S|U|4459
*
7TOQ|1|A25S|A|4517
7TOQ|1|A25S|A|4518
7TOQ|1|A25S|C|4519
7TOQ|1|A25S|G|4520

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL16

uL13

Chain AL23

60S ribosomal protein L23