IL_7TOQ_230

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_230 not in the Motif Atlas

Homologous match to IL_8C3A_120

Geometric discrepancy: 0.1358

The information below is about IL_8C3A_120

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7TOQ|1|A25S|G|4495
7TOQ|1|A25S|A|4496
7TOQ|1|A25S|U|4497
*
7TOQ|1|A25S|A|4503
7TOQ|1|A25S|C|4504
7TOQ|1|A25S|C|4505

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL23

60S ribosomal protein L23