IL_7TOQ_239

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

7TOQ|1|A25S|A|4656, 7TOQ|1|A25S|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_239 not in the Motif Atlas

Homologous match to IL_8C3A_128

Geometric discrepancy: 0.2899

The information below is about IL_8C3A_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7TOQ|1|A25S|U|4641
7TOQ|1|A25S|U|4642
*
7TOQ|1|A25S|A|4655
7TOQ|1|A25S|A|4656
7TOQ|1|A25S|U|4657
7TOQ|1|A25S|G|4658

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AL31

60S ribosomal protein L31