IL_7TOQ_264

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

7TOQ|1|A18S|U|368, 7TOQ|1|A18S|C|369

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_264 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.2657

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7TOQ|1|A18S|U|366
7TOQ|1|A18S|U|367
7TOQ|1|A18S|U|368
7TOQ|1|A18S|C|369
7TOQ|1|A18S|G|370
7TOQ|1|A18S|A|371
*
7TOQ|1|A18S|U|393
7TOQ|1|A18S|G|394

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS08

40S ribosomal protein S8

Chain AS11

40S ribosomal protein S11