IL_7TOQ_290

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGUGUAGAAUAAGUGGGAG*CGCCGGUGAAAUACCACUACU

Length

41 nucleotides

Bulged bases

7TOQ|1|A25S|G|3958, 7TOQ|1|A25S|A|4046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOQ|1|A25S|A|3954
7TOQ|1|A25S|G|3955
7TOQ|1|A25S|G|3956
7TOQ|1|A25S|U|3957
7TOQ|1|A25S|G|3958
7TOQ|1|A25S|U|3959
7TOQ|1|A25S|A|3960
7TOQ|1|A25S|G|3961
7TOQ|1|A25S|A|3962
7TOQ|1|A25S|A|3963
7TOQ|1|A25S|U|3964
7TOQ|1|A25S|A|3965
7TOQ|1|A25S|A|3966
7TOQ|1|A25S|G|3967
7TOQ|1|A25S|U|3968
7TOQ|1|A25S|G|3969
7TOQ|1|A25S|G|3970
7TOQ|1|A25S|G|3971
7TOQ|1|A25S|A|3972
7TOQ|1|A25S|G|3973
*
7TOQ|1|A25S|C|4038
7TOQ|1|A25S|G|4039
7TOQ|1|A25S|C|4040
7TOQ|1|A25S|C|4041
7TOQ|1|A25S|G|4042
7TOQ|1|A25S|G|4043
7TOQ|1|A25S|U|4044
7TOQ|1|A25S|G|4045
7TOQ|1|A25S|A|4046
7TOQ|1|A25S|A|4047
7TOQ|1|A25S|A|4048
7TOQ|1|A25S|U|4049
7TOQ|1|A25S|A|4050
7TOQ|1|A25S|C|4051
7TOQ|1|A25S|C|4052
7TOQ|1|A25S|A|4053
7TOQ|1|A25S|C|4054
7TOQ|1|A25S|U|4055
7TOQ|1|A25S|A|4056
7TOQ|1|A25S|C|4057
7TOQ|1|A25S|U|4058

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AS25

40S ribosomal protein S25

Chain PTRN

Transfer RNA; tRNA