3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GAUUAAG*CGC
Length
10 nucleotides
Bulged bases
7TOR|1|A18S|A|46
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOR_004 not in the Motif Atlas
Geometric match to IL_4V88_387
Geometric discrepancy: 0.165
The information below is about IL_4V88_387
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77761.1
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

7TOR|1|A18S|G|41
7TOR|1|A18S|A|42
7TOR|1|A18S|U|43
7TOR|1|A18S|U|44
7TOR|1|A18S|A|45
7TOR|1|A18S|A|46
7TOR|1|A18S|G|47
*
7TOR|1|A18S|C|479
7TOR|1|A18S|G|480
7TOR|1|A18S|C|481

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain AS23
40S ribosomal protein S23

Coloring options:


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