IL_7TOR_019
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 7TOR|1|A18S|U|361, 7TOR|1|A18S|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOR_019 not in the Motif Atlas
- Geometric match to IL_5J7L_014
- Geometric discrepancy: 0.1168
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7TOR|1|A18S|U|359
7TOR|1|A18S|A|360
7TOR|1|A18S|U|361
7TOR|1|A18S|C|362
7TOR|1|A18S|A|363
7TOR|1|A18S|A|364
*
7TOR|1|A18S|U|396
7TOR|1|A18S|G|397
7TOR|1|A18S|A|398
7TOR|1|A18S|C|399
7TOR|1|A18S|C|400
7TOR|1|A18S|A|401
7TOR|1|A18S|C|402
7TOR|1|A18S|G|403
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AS08
- 40S ribosomal protein S8
- Chain AS11
- 40S ribosomal protein S11
- Chain AS23
- 40S ribosomal protein S23
Coloring options: