3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CAU*AAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOR_023 not in the Motif Atlas
Geometric match to IL_3NJ7_004
Geometric discrepancy: 0.1445
The information below is about IL_3NJ7_004
Detailed Annotation
Isolated near basepair
Broad Annotation
Isolated near basepair
Motif group
IL_42997.3
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
20

Unit IDs

7TOR|1|A18S|C|459
7TOR|1|A18S|A|460
7TOR|1|A18S|U|461
*
7TOR|1|A18S|A|468
7TOR|1|A18S|A|469
7TOR|1|A18S|G|470

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain AL23
60S ribosomal protein L23
Chain AS06
40S ribosomal protein S6

Coloring options:


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