IL_7TOR_057

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_057 not in the Motif Atlas

Geometric match to IL_4LFB_034

Geometric discrepancy: 0.0985

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7TOR|1|A18S|G|1168
7TOR|1|A18S|G|1169
7TOR|1|A18S|A|1170
7TOR|1|A18S|G|1171
7TOR|1|A18S|U|1172
7TOR|1|A18S|A|1173
7TOR|1|A18S|U|1174
7TOR|1|A18S|G|1175
*
7TOR|1|A18S|U|1186
7TOR|1|A18S|G|1187
7TOR|1|A18S|A|1188
7TOR|1|A18S|A|1189
7TOR|1|A18S|A|1190
7TOR|1|A18S|C|1191

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL41

eL41

Chain AS23

40S ribosomal protein S23