IL_7TOR_063

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_063 not in the Motif Atlas

Geometric match to IL_4E48_005

Geometric discrepancy: 0.1355

The information below is about IL_4E48_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7TOR|1|A18S|G|1270
7TOR|1|A18S|C|1271
7TOR|1|A18S|C|1272
*
7TOR|1|A18S|G|1510
7TOR|1|A18S|U|1511
7TOR|1|A18S|C|1512

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS10

40S ribosomal protein S10

Chain AS29

40S ribosomal protein S29

Chain AS31

40S ribosomal protein S27a