3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UGG*CGA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOR_071 not in the Motif Atlas
Geometric match to IL_7A0S_042
Geometric discrepancy: 0.1234
The information below is about IL_7A0S_042
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

7TOR|1|A18S|U|1347
7TOR|1|A18S|G|1348
7TOR|1|A18S|G|1349
*
7TOR|1|A18S|C|1380
7TOR|1|A18S|G|1381
7TOR|1|A18S|A|1382

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain AS00
40S_SA_C domain-containing protein
Chain AS02
40S ribosomal protein S2
Chain AS03
40S ribosomal protein S3
Chain AS17
40S ribosomal protein S17

Coloring options:


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