IL_7TOR_071
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGG*CGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOR_071 not in the Motif Atlas
- Geometric match to IL_7A0S_042
- Geometric discrepancy: 0.1234
- The information below is about IL_7A0S_042
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
7TOR|1|A18S|U|1347
7TOR|1|A18S|G|1348
7TOR|1|A18S|G|1349
*
7TOR|1|A18S|C|1380
7TOR|1|A18S|G|1381
7TOR|1|A18S|A|1382
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS00
- 40S_SA_C domain-containing protein
- Chain AS02
- 40S ribosomal protein S2
- Chain AS03
- 40S ribosomal protein S3
- Chain AS17
- 40S ribosomal protein S17
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