IL_7TOR_080

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7TOR|1|A18S|C|1701, 7TOR|1|A18S|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_080 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2281

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7TOR|1|A18S|C|1700
7TOR|1|A18S|C|1701
7TOR|1|A18S|G|1702
*
7TOR|1|A18S|C|1833
7TOR|1|A18S|A|1834
7TOR|1|A18S|A|1835
7TOR|1|A18S|G|1836

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS26

eS26

Chain MRNA

mRNA

Chain PTRN

Transfer RNA; tRNA