IL_7TOR_085

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_085 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.1412

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7TOR|1|A18S|C|1717
7TOR|1|A18S|G|1718
7TOR|1|A18S|A|1719
7TOR|1|A18S|U|1720
*
7TOR|1|A18S|A|1813
7TOR|1|A18S|G|1814
7TOR|1|A18S|A|1815
7TOR|1|A18S|G|1816

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL41

eL41