IL_7TOR_117

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

7TOR|1|A28S|G|666, 7TOR|1|A28S|A|667, 7TOR|1|A28S|C|668

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_117 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1126

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

7TOR|1|A28S|G|487
7TOR|1|A28S|G|488
*
7TOR|1|A28S|C|665
7TOR|1|A28S|G|666
7TOR|1|A28S|A|667
7TOR|1|A28S|C|668
7TOR|1|A28S|C|669

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL18

eL18

Chain ALNW

60S ribosomal protein L28