IL_7TOR_144

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_144 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.1438

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7TOR|1|A28S|C|1551
7TOR|1|A28S|G|1552
7TOR|1|A28S|A|1553
7TOR|1|A28S|A|1554
7TOR|1|A28S|G|1555
*
7TOR|1|A28S|U|1572
7TOR|1|A28S|G|1573
7TOR|1|A28S|G|1574
7TOR|1|A28S|A|1575
7TOR|1|A28S|G|1576

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL19

60S ribosomal protein L19

Chain AL43

60S ribosomal protein L37a