3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
AGUCGG*CUGU
Length
10 nucleotides
Bulged bases
7TOR|1|A28S|G|3839
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOR_191 not in the Motif Atlas
Homologous match to IL_8C3A_083
Geometric discrepancy: 0.1267
The information below is about IL_8C3A_083
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06455.1
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

7TOR|1|A28S|A|2850
7TOR|1|A28S|G|2851
7TOR|1|A28S|U|2852
7TOR|1|A28S|C|2853
7TOR|1|A28S|G|2854
7TOR|1|A28S|G|2855
*
7TOR|1|A28S|C|3837
7TOR|1|A28S|U|3838
7TOR|1|A28S|G|3839
7TOR|1|A28S|U|3840

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain AL03
60S ribosomal protein L3
Chain AL23
60S ribosomal protein L23

Coloring options:


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