IL_7TOR_192

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7TOR|1|A28S|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_192 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1097

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7TOR|1|A28S|C|2867
7TOR|1|A28S|G|2868
7TOR|1|A28S|U|2869
7TOR|1|A28S|A|2870
7TOR|1|A28S|A|2871
7TOR|1|A28S|C|2872
*
7TOR|1|A28S|G|2877
7TOR|1|A28S|G|2878
7TOR|1|A28S|A|2879
7TOR|1|A28S|U|2880
7TOR|1|A28S|A|2881
7TOR|1|A28S|A|2882
7TOR|1|A28S|G|2883

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL41

eL41

Chain AL43

60S ribosomal protein L37a