3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CGUAAC*GGAUAAG
Length
13 nucleotides
Bulged bases
7TOR|1|A28S|U|2880
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOR_192 not in the Motif Atlas
Geometric match to IL_4V9F_063
Geometric discrepancy: 0.1097
The information below is about IL_4V9F_063
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_47346.2
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

7TOR|1|A28S|C|2867
7TOR|1|A28S|G|2868
7TOR|1|A28S|U|2869
7TOR|1|A28S|A|2870
7TOR|1|A28S|A|2871
7TOR|1|A28S|C|2872
*
7TOR|1|A28S|G|2877
7TOR|1|A28S|G|2878
7TOR|1|A28S|A|2879
7TOR|1|A28S|U|2880
7TOR|1|A28S|A|2881
7TOR|1|A28S|A|2882
7TOR|1|A28S|G|2883

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain A18S
Small subunit ribosomal RNA; SSU rRNA
Chain AL41
eL41
Chain AL43
60S ribosomal protein L37a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1381 s