IL_7TOR_192
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 7TOR|1|A28S|U|2880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOR_192 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.1097
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_47346.2
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
7TOR|1|A28S|C|2867
7TOR|1|A28S|G|2868
7TOR|1|A28S|U|2869
7TOR|1|A28S|A|2870
7TOR|1|A28S|A|2871
7TOR|1|A28S|C|2872
*
7TOR|1|A28S|G|2877
7TOR|1|A28S|G|2878
7TOR|1|A28S|A|2879
7TOR|1|A28S|U|2880
7TOR|1|A28S|A|2881
7TOR|1|A28S|A|2882
7TOR|1|A28S|G|2883
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL41
- eL41
- Chain AL43
- 60S ribosomal protein L37a
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