IL_7TOR_202

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7TOR|1|A28S|A|3785, 7TOR|1|A28S|C|3791, 7TOR|1|A28S|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_202 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1072

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7TOR|1|A28S|C|3781
7TOR|1|A28S|C|3782
7TOR|1|A28S|A|3783
7TOR|1|A28S|A|3784
7TOR|1|A28S|A|3785
7TOR|1|A28S|U|3786
7TOR|1|A28S|G|3787
7TOR|1|A28S|C|3788
7TOR|1|A28S|C|3789
7TOR|1|A28S|U|3790
7TOR|1|A28S|C|3791
7TOR|1|A28S|G|3792
*
7TOR|1|A28S|C|3808
7TOR|1|A28S|G|3809
7TOR|1|A28S|C|3810
7TOR|1|A28S|G|3811

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL41

eL41