IL_7TOR_214

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_214 not in the Motif Atlas

Homologous match to IL_8C3A_108

Geometric discrepancy: 0.0991

The information below is about IL_8C3A_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7TOR|1|A28S|C|4243
7TOR|1|A28S|A|4244
7TOR|1|A28S|G|4245
*
7TOR|1|A28S|C|4263
7TOR|1|A28S|G|4264
7TOR|1|A28S|U|4265
7TOR|1|A28S|G|4266
7TOR|1|A28S|G|4267

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL05

60S ribosomal protein L5

Chain AL11

60S ribosomal protein L11

Chain AL21

60S ribosomal protein L21